Software & Tools
Self-developed application systems, platforms, and research tools.
Application Systems
Web platforms and application systems
PloidySight
A platform for CNV-based genotype identification and single-chromosome variation detection in polyploid hybrid populations. It supports read-depth-based copy-number calling together with per-chromosome variation detection for polyploid genomes and their hybrid descendants.
Working paper · Related software copyright pending
PubMeta Engine
A multi-agent AI system for biomedical evidence synthesis and multi-omics data mining. It automates literature screening, evidence extraction, and integrative analysis across heterogeneous biomedical and multi-omics datasets.
Working paper
NeuroDeath-Atlas
An atlas resource for the systematic characterization of cell death programs across the nervous system, integrating multi-omics data to map cell-death–associated signatures across cell types and conditions.
Analysis Systems
Specialized analysis pipelines and software systems (software copyright)
Breast Cancer Prognosis Assessment
A software for breast cancer prognosis assessment using spatial transcriptomics combined with single-cell data.
Software Copyright No.: 2025SR1949996
Breast Cancer Heterogeneity Fusion System
A fusion system for breast cancer heterogeneity analysis using imaging and sequencing data.
Software Copyright No.: 2025SR1949974
Ploidy Analysis & Literature Mining Platform
A platform for ploidy analysis and genotype identification of biomedical literature and omics data mining.
Software Copyright No.: NA (pending)
Hybrid Karyotype Analysis System
A system for karyotype analysis and genotype identification of hybrid strains derived from goldfish (Carassius auratus) and common carp (Cyprinus carpio).
Software Copyright No.: NA (pending)
Methods & Notes
Laboratory protocols and technical write-ups
Molecular Cloning Methods
A detailed technical guide to restriction enzyme, Gateway, TOPO, Gibson, Golden Gate, LIC, and yeast-mediated cloning methods.